seapodym-parallel
Fish dynamics models with parameter estimations
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DistDataCollector.h
1#include <mpi.h>
2#include <set>
3#include <vector>
4#include <limits>
5
6#ifndef DIST_DATA_COLLECTOR
7#define DIST_DATA_COLLECTOR
8
9
15
16 private:
17
18 // MPI communicator to use for communication
19 MPI_Comm comm;
20
21 // number of chunks
22 std::size_t numChunks;
23
24 // local size of the data
25 std::size_t numSize;
26
27 // the array that collects the data of size numChunks * numSize on rank 0
28 double* collectedData;
29
30 // MPI window for remote memory access
31 MPI_Win win;
32
33 public:
34
35 // initial values
36 const double BAD_VALUE = std::numeric_limits<double>::quiet_NaN();
37
44 DistDataCollector(MPI_Comm comm, int numChunks, int numSize);
45
50
54 MPI_Win &getWin(){
55 return this->win;
56 }
57
63 void fence();
64
68 void inline startEpoch() {
69 // Start a passive target shared local access epoch for all processes in the communicator
70 MPI_Win_lock_all(MPI_MODE_NOCHECK, this->win);
71 }
72
76 void inline flush() {
77 MPI_Win_flush_all(this->win);
78 }
79
83 void inline endEpoch() {
84 MPI_Win_unlock_all(this->win);
85 }
86
93 void put(int chunkId, const double* data);
94
102 void inline putAsync(int chunkId, const double* data) {
103 MPI_Put(data, this->numSize, MPI_DOUBLE, 0, chunkId * this->numSize, this->numSize, MPI_DOUBLE, this->win);
104 }
105
112 std::vector<double> get(int chunkId);
113
120 void get(int chunkId, double* buffer);
121
129 void inline getAsync(int chunkId, double* buffer) {
130 MPI_Get(buffer, this->numSize, MPI_DOUBLE, 0, chunkId * this->numSize, this->numSize, MPI_DOUBLE, this->win);
131 }
132
139 return this->collectedData;
140 }
141
146 int getNumChunks() const {
147 return this->numChunks;
148 }
149
154 int getNumSize() const {
155 return this->numSize;
156 }
157
161 void free() { // Should this be removed and just implemented in the destructor?
162 if (this->win != MPI_WIN_NULL) {
163 MPI_Win_free(&this->win);
164 }
165 //No need to free the data, MPI_Win_free will free the pointer
166 //MPI_Free_mem(this->collectedData);
167 }
168
169 // Disable copy and assignment operations
170 // to prevent accidental copying of the DistDataCollector instance
171 // This is important because the class manages an MPI window and data pointer
172 // which should not be copied or assigned.
173 DistDataCollector(const DistDataCollector&) = delete; // Disable copy constructor
174 DistDataCollector& operator=(const DistDataCollector&) = delete; // Disable assignment operator
175 DistDataCollector(DistDataCollector&& other) noexcept; // Move constructor
176 DistDataCollector& operator=(DistDataCollector&& other) noexcept; // Move assignment operator
177};
178
179#endif // DIST_DATA_COLLECTOR
DistDataCollector is a class that collects data stored on multiple MPI processes into a large array s...
Definition DistDataCollector.h:14
void fence()
Definition DistDataCollector.cpp:39
void endEpoch()
End an epoch for RMA operations.
Definition DistDataCollector.h:83
void put(int chunkId, const double *data)
Put the local data into the collected array.
Definition DistDataCollector.cpp:44
int getNumSize() const
Definition DistDataCollector.h:154
std::vector< double > get(int chunkId)
Get a slice of the remote, collected array to the local worker.
Definition DistDataCollector.cpp:60
void startEpoch()
Start an epoch for RMA operations.
Definition DistDataCollector.h:68
double * getCollectedDataPtr()
Definition DistDataCollector.h:138
void putAsync(int chunkId, const double *data)
Put the local data into the collected array (non-blocking).
Definition DistDataCollector.h:102
void free()
Free the MPI window and empty the collected data.
Definition DistDataCollector.h:161
void flush()
Ensure that all RMA operations are completed.
Definition DistDataCollector.h:76
int getNumChunks() const
Definition DistDataCollector.h:146
void getAsync(int chunkId, double *buffer)
Get a slice of the remote, collected array to the local worker (non-blocking).
Definition DistDataCollector.h:129
~DistDataCollector()
Destructor.
Definition DistDataCollector.cpp:28
DistDataCollector(MPI_Comm comm, int numChunks, int numSize)
Constructor.
Definition DistDataCollector.cpp:8
MPI_Win & getWin()
Definition DistDataCollector.h:54